Preview

[Data set] Evolutionary conserved and divergent responses to copper zinc superoxide dismutase inhibition in plants.

Registered ARC content:

root
- isa.investigation.xlsx
- workflows
  - SNP_pipe_mp.sh
  - new_deg_pipe_four_methods_noiseqbio_schippers_20211021.r
  - 3d_pca_plot_schippers_20211021.r
  - SNP_pipe.sh
  - Experiment1
    - SNP_pipe_mp.sh
    - new_deg_pipe_four_methods_noiseqbio_schippers_20211021.r
    - 3d_pca_plot_schippers_20211021.r
    - SNP_pipe.sh
  - Experiment2
    - new_deg_pipe_four_methods_noiseqbio_schippers_second_mp_20211209.r
    - snp_pipe_at.sh
    - snp_pipe_mp.sge
    - 3d_pca_plot_schippers_second_20211209.r
    - snp_pipe_at.sge
    - new_deg_pipe_four_methods_noiseqbio_schippers_second_at_20211209.r
    - snp_pipe_mp.sh
- runs
  - Counting
    - Mp_all.p.sort.wotRNA.counts
    - 31315_all.p.sort.counts
    - Mp.p.sort.wotRNA.rpkm
    - Mp.p.sort.counts
    - 31315.p.sort.rpkm
    - mapping_stat.xlsx
    - MpTak_v6.1r1.mrna.fasta.GC.length
    - Mp_all.p.sort.wotRNA.rpkm
    - 31315.p.sort.counts
    - 31315_all.p.sort.rpkm
    - Mp_all.p.sort.counts
    - Mp.p.sort.wotRNA.counts
  - Experiment2
    - mapping_stats_mp_at.xlsx
- assays
  - RNASeq_Ppatens_Mpolymorpha
    - isa.assay.xlsx
    - README.md
    - dataset
      - MF60
        
        MF60_1.fq.gz
        
        MF60_2.fq.gz
      - MF61
        
        MF61_2.fq.gz
        
        MF61_1.fq.gz
      - P111
        
        P111_2.fq.gz
        
        P111_1.fq.gz
      - MF81
        
        MF81_2.fq.gz
        
        MF81_1.fq.gz
      - MF67
        
        MF67_2.fq.gz
        
        MF67_1.fq.gz
      - MF76
        
        MF76_1.fq.gz
        
        MF76_2.fq.gz
      - P97
        
        P97_2.fq.gz
        
        P97_1.fq.gz
      - P103
        
        P103_2.fq.gz
        
        P103_1.fq.gz
      - P91
        
        P91_2.fq.gz
        
        P91_1.fq.gz
      - P110
        
        P110_2.fq.gz
        
        P110_1.fq.gz
      - P104
        
        P104_2.fq.gz
        
        P104_1.fq.gz
      - MF66
        
        MF66_1.fq.gz
        
        MF66_2.fq.gz
      - P95
        
        P95_1.fq.gz
        
        P95_2.fq.gz
      - P96
        
        P96_1.fq.gz
        
        P96_2.fq.gz
      - MF68
        
        MF68_1.fq.gz
        
        MF68_2.fq.gz
      - P89
        
        P89_2.fq.gz
        
        P89_1.fq.gz
      - P90
        
        P90_1.fq.gz
        
        P90_2.fq.gz
      - MF62
        
        MF62_1.fq.gz
        
        MF62_2.fq.gz
      - MF82
        
        MF82_2.fq.gz
        
        MF82_1.fq.gz
      - MF75
        
        MF75_2.fq.gz
        
        MF75_1.fq.gz
      - MF74
        
        MF74_2.fq.gz
        
        MF74_1.fq.gz
      - MF80
        
        MF80_1.fq.gz
        
        MF80_2.fq.gz
      - P105
        
        P105_2.fq.gz
        
        P105_1.fq.gz
      - P109
        
        P109_2.fq.gz
        
        P109_1.fq.gz
  - Nanodrop
    - isa.assay.xlsx
    - README.md
  - RNASeq_Athaliana_Mpolymorpha
    - isa.assay.xlsx
    - README.md
    - dataset
      - M46
        
        M46_1.fq.gz
        
        M46_2.fq.gz
      - A20
        
        A20_2.fq.gz
        
        A20_1.fq.gz
      - A10
        
        A10_2.fq.gz
        
        A10_1.fq.gz
      - M40
        
        M40_2.fq.gz
        
        M40_1.fq.gz
      - A4
        
        A4_2.fq.gz
        
        A4_1.fq.gz
      - A24
        
        A24_2.fq.gz
        
        A24_1.fq.gz
      - A5
        
        A5_1.fq.gz
        
        A5_2.fq.gz
      - M32
        
        M32_1.fq.gz
        
        M32_2.fq.gz
      - A12
        
        A12_1.fq.gz
        
        A12_2.fq.gz
      - A26
        
        A26_1.fq.gz
        
        A26_2.fq.gz
      - M39
        
        M39_1.fq.gz
        
        M39_2.fq.gz
      - M52
        
        M52_2.fq.gz
        
        M52_1.fq.gz
      - A6
        
        A6_2.fq.gz
        
        A6_1.fq.gz
      - M47
        
        M47_1.fq.gz
        
        M47_2.fq.gz
      - M38
        
        M38_2.fq.gz
        
        M38_1.fq.gz
      - M53
        
        M53_1.fq.gz
        
        M53_2.fq.gz
      - A25
        
        A25_1.fq.gz
        
        A25_2.fq.gz
      - A18
        
        A18_2.fq.gz
        
        A18_1.fq.gz
      - M48
        
        M48_1.fq.gz
        
        M48_2.fq.gz
      - A19
        
        A19_2.fq.gz
        
        A19_1.fq.gz
      - M54
        
        M54_2.fq.gz
        
        M54_1.fq.gz
      - M33
        
        M33_2.fq.gz
        
        M33_1.fq.gz
      - A11
        
        A11_1.fq.gz
        
        A11_2.fq.gz
      - M34
        
        M34_1.fq.gz
        
        M34_2.fq.gz
- studies
  - SOD-inhibition
    - README.md
    - isa.study.xlsx