Preview

[Data set] A critical role of sux cistron-mediated sucrose uptake for virulence of the rice blight pathogen Xanthomonas oryzae pv. oryzae

Registered ARC content:

root
- README.md
- isa.investigation.xlsx
- assays
  - Clipping
    - README.md
    - isa.assay.xlsx
    - dataset
      - Inoculation data_IR24.xlsx
      - Inoculation data_Kitaake.xlsx
      - sucrose gene on Nip_V2.xlsx
    - protocols
      - clippingassay.docx
  - DNS Assay
    - README.md
    - isa.assay.xlsx
    - dataset
      - Method 1_20241213_151246.xlsx
      - Method 1_20241213_153520.xlsx
      - Method 1_20241213_162634.xlsx
      - Method 1_20241213_164820.xlsx
      - Method 1_20241216_163243.xlsx
      - SuxB_KM.xlsx
    - protocols
      - Colorimetric-Invertase-Assay.pdf
  - Growth Curves
    - README.md
    - isa.assay.xlsx
    - dataset
      - AnalyzedData
        
        wt_analyzed - wt.tif
        
        ∆suxA_analyzed - suxA.tif
        
        ∆suxB_analyzed - suxB.tif
        
        ∆suxC_analyzed - suxC.tif
        
        ∆suxR_analyzed - suxR.tif
        
        ∆sux_analyzed - ∆sux(203-205)_summary.xlsx
    - protocols
      - Growth-Assay-in-12-well-plates.pdf
  - Motility
    - README.md
    - isa.assay.xlsx
    - dataset
      - AnalyzedData
        
        Swarming_summary.xlsx
        
        Swimming_summary.xlsx
      - RawData
        
        Swarming - Swarming_wt.xlsx - Swarming_∆sux.xlsx
        
        Swimming - Swimming_wt.xlsx - Swimming_∆sux.xlsx
    - protocols
      - Protocol_Swarming-Assay-for-Xoo.pdf
      - Protocol_Swimming-Assay-for-Xoo.pdf
  - RNAseq_Visualization
    - README.md
    - isa.assay.xlsx
    - dataset
      - invitro_RNAseq_analysis
        
        RNAseq_Visuals - 2hourvolcano3D.html - 4hourvolcano3D.html - 6hourvolcano3D.html - PCA.png
    - protocols
      - PCA_Zoellner6.Rmd
      - Volcano3D_Zoellner14.Rmd
  - RNAseq_Xoo_15012024
    - README.md
    - isa.assay.xlsx
    - dataset
      - OD600 Measurements 20231212.xlsx
      - raw_data
        
        NB02Glc2_1.fq.gz
        
        NB02Glc2_2.fq.gz
        
        NB02Glc4_1.fq.gz
        
        NB02Glc4_2.fq.gz
        
        NB02Glc6_1.fq.gz
        
        NB02Glc6_2.fq.gz
        
        NB0_1.fq.gz
        
        NB0_2.fq.gz
        
        NB1Suc2_1.fq.gz
        
        NB1Suc2_2.fq.gz
        
        NB1Suc4_1.fq.gz
        
        NB1Suc4_2.fq.gz
        
        NB1Suc6_1.fq.gz
        
        NB1Suc6_2.fq.gz
        
        NB1Suc8_1.fq.gz
        
        NB1Suc8_2.fq.gz
        
        NB2Glc2_1.fq.gz
        
        NB2Glc2_2.fq.gz
        
        NB2Glc4_1.fq.gz
        
        NB2Glc4_2.fq.gz
        
        NB2Glc6_1.fq.gz
        
        NB2Glc6_2.fq.gz
        
        NB2_1.fq.gz
        
        NB2_2.fq.gz
        
        NB4_1.fq.gz
        
        NB4_2.fq.gz
        
        NB6_1.fq.gz
        
        NB6_2.fq.gz
        
        NB8_1.fq.gz
        
        NB8_2.fq.gz
      - read_counts
        
        1.count - gene_count.xls
    - protocols
      - 2024-02-01-RNAseq-of-PXO99A-in-NB-with-different-C-sources-I.pdf
      - Methods_prokaryote-seq.pdf
  - qRT-PCR
    - README.md
    - isa.assay.xlsx
    - dataset
      - qRT-PCR_07082023
        
        ∆ct sux genes - sucrase_summary.xlsx
      - qRT-PCR_14022024
        
        14022024_∆ct sux genes - dct_2_4_6_8hours.pptx
    - protocols
      - qRT-PCR_07082023
        
        2023-07-17-qPCR-of-suxA.pdf
        
        2023-07-19-qPCR-of-suxB.pdf
        
        2023-08-03-qPCR-of-suxC.pdf
        
        2023-08-07-qPCR-of-suxR.pdf
      - qRT-PCR_14022024
        
        qPCR_14.02.2024_I_Analysis.xlsx
- studies
  - Bacterial Resources
    - README.md
    - isa.study.xlsx
    - protocols
      - 2023-08-17-Mutation-in-Xoo-via-Homologous-Recombination.pdf
  - Media
    - README.md
    - isa.study.xlsx
  - Plant Resources
    - README.md
    - isa.study.xlsx
  - Transcriptomics
    - README.md
    - isa.study.xlsx