[Data set] Systems-wide investigation of responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii.

File contents:

• root
  • isa.investigation.xlsx
  • README.md
  • runs
    • Transcriptomics
      • 2020_01_29_DEX_T1intercept_noCoV_multipletestingcorrected_added0_01_differencecutoff.csv
      • transcripts40zScores.txt
      • transcripts35zScores.txt
      • 2019_11_12_TPM_normalized_RNAseq_counts.csv
    • Proteomics
      • protein35zScores.txt
      • imputeKnnNoLow_40.txt
      • imputeKnnNoLow_35.txt
      • protein40zScores.txt
  • assays
    • Metabolomics
      • isa.assay.xlsx
      • README.md
    • Transcriptomics
      • isa.assay.xlsx
      • README.md
      • dataset
        • DB_099_CAMMD_CTTGTA_L001_R1_001.fastq.gz
        • DB_165_re-C3MD_GTGAAA_L002_R1_001.fastq.gz
        • GSE182207_raw_count_matrix.txt.gz
        • DB_103_CAMMD_AGTCAA_L001_R1_001.fastq.gz
        • DB_161_reC3MD_GTCCGC_L001_R1_001.fastq.gz
        • DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz
        • DB_163_reC3MD_GTGAAA_L001_R1_001.fastq.gz
        • fastq
          • DataDescription.xlsx
          • 40C
            • - recovery_48h - SRR15481402 - SRR15481402_2.fastq.gz - SRR15481402_1.fastq.gz - SRR15481403 - SRR15481403_1.fastq.gz - SRR15481403_2.fastq.gz - SRR15481401 - SRR15481401_1.fastq.gz - SRR15481401_2.fastq.gz - recovery_08h - SRR15481397 - SRR15481397_1.fastq.gz - SRR15481397_2.fastq.gz - SRR15481396 - SRR15481396_2.fastq.gz - SRR15481396_1.fastq.gz - SRR15481395 - SRR15481395_1.fastq.gz - SRR15481395_2.fastq.gz - heat_08h - SRR15481379 - SRR15481379_2.fastq.gz - SRR15481379_1.fastq.gz - SRR15481377 - SRR15481377_1.fastq.gz - SRR15481377_2.fastq.gz - SRR15481378 - SRR15481378_2.fastq.gz - SRR15481378_1.fastq.gz - heat_01h - SRR15481370 - SRR15481370_1.fastq.gz - SRR15481370_2.fastq.gz - SRR15481368 - SRR15481368_2.fastq.gz - SRR15481368_1.fastq.gz - SRR15481369 - SRR15481369_1.fastq.gz - SRR15481369_2.fastq.gz - preheat - SRR15481360 - SRR15481360_1.fastq.gz - SRR15481360_2.fastq.gz - SRR15481361 - SRR15481361_1.fastq.gz - SRR15481361_2.fastq.gz - SRR15481359 - SRR15481359_2.fastq.gz - SRR15481359_1.fastq.gz - recovery_04h - SRR15481393 - SRR15481393_1.fastq.gz - SRR15481393_2.fastq.gz - SRR15481392 - SRR15481392_2.fastq.gz - SRR15481392_1.fastq.gz - SRR15481394 - SRR15481394_1.fastq.gz - SRR15481394_2.fastq.gz - heat_24h - SRR15481384 - SRR15481384_2.fastq.gz - SRR15481384_1.fastq.gz - SRR15481385 - SRR15481385_2.fastq.gz - SRR15481385_1.fastq.gz - SRR15481383 - SRR15481383_2.fastq.gz - SRR15481383_1.fastq.gz - heat_04h - SRR15481374 - SRR15481374_2.fastq.gz - SRR15481374_1.fastq.gz - SRR15481375 - SRR15481375_2.fastq.gz - SRR15481375_1.fastq.gz - SRR15481376 - SRR15481376_1.fastq.gz - SRR15481376_2.fastq.gz - recovery_02h - SRR15481391 - SRR15481391_2.fastq.gz - SRR15481391_1.fastq.gz - SRR15481389 - SRR15481389_2.fastq.gz - SRR15481389_1.fastq.gz - SRR15481390 - SRR15481390_1.fastq.gz - SRR15481390_2.fastq.gz - recovery_24h - SRR15481400 - SRR15481400_2.fastq.gz - SRR15481400_1.fastq.gz - SRR15481399 - SRR15481399_1.fastq.gz - SRR15481399_2.fastq.gz - SRR15481398 - SRR15481398_1.fastq.gz - SRR15481398_2.fastq.gz - reach_control_temp - SRR15481387 - SRR15481387_2.fastq.gz - SRR15481387_1.fastq.gz - SRR15481388 - SRR15481388_1.fastq.gz - SRR15481388_2.fastq.gz - SRR15481386 - SRR15481386_2.fastq.gz - SRR15481386_1.fastq.gz - reach_high_temp - SRR15481363 - SRR15481363_2.fastq.gz - SRR15481363_1.fastq.gz - SRR15481364 - SRR15481364_1.fastq.gz - SRR15481364_2.fastq.gz - SRR15481362 - SRR15481362_1.fastq.gz - SRR15481362_2.fastq.gz - heat_00.5h - SRR15481366 - SRR15481366_2.fastq.gz - SRR15481366_1.fastq.gz - SRR15481367 - SRR15481367_1.fastq.gz - SRR15481367_2.fastq.gz - 40CA(SRR15481365) - 40C_A_3_2.fastq.gz - 40C_A_3_1.fastq.gz - heat_02h - SRR15481372 - SRR15481372_2.fastq.gz - SRR15481372_1.fastq.gz - SRR15481371 - SRR15481371_2.fastq.gz - SRR15481371_1.fastq.gz - SRR15481373 - SRR15481373_1.fastq.gz - SRR15481373_2.fastq.gz - heat_16h - SRR15481380 - SRR15481380_2.fastq.gz - SRR15481380_1.fastq.gz - 40CC(SRR15481382) - 40C_C_8_2.fastq.gz - 40C_C_8_1.fastq.gz - SRR15481381 - SRR15481381_2.fastq.gz - SRR15481381_1.fastq.gz
          • 35C
            • - recovery_48h - SRR15481358 - SRR15481358_1.fastq.gz - SRR15481358_2.fastq.gz - SRR15481357 - SRR15481357_2.fastq.gz - SRR15481357_1.fastq.gz - SRR15481356 - SRR15481356_2.fastq.gz - SRR15481356_1.fastq.gz - recovery_08h - SRR15481351 - SRR15481351_2.fastq.gz - SRR15481351_1.fastq.gz - SRR15481350 - SRR15481350_1.fastq.gz - SRR15481350_2.fastq.gz - SRR15481352 - SRR15481352_1.fastq.gz - SRR15481352_2.fastq.gz - heat_08h - SRR15481333 - SRR15481333_1.fastq.gz - SRR15481333_2.fastq.gz - SRR15481332 - SRR15481332_1.fastq.gz - SRR15481332_2.fastq.gz - SRR15481334 - SRR15481334_1.fastq.gz - SRR15481334_2.fastq.gz - heat_01h - SRR15481324 - SRR15481324_1.fastq.gz - SRR15481324_2.fastq.gz - SRR15481323 - SRR15481323_1.fastq.gz - SRR15481323_2.fastq.gz - SRR15481325 - SRR15481325_1.fastq.gz - SRR15481325_2.fastq.gz - preheat - SRR15481315 - SRR15481315_2.fastq.gz - SRR15481315_1.fastq.gz - SRR15481316 - SRR15481316_1.fastq.gz - SRR15481316_2.fastq.gz - SRR15481314 - SRR15481314_2.fastq.gz - SRR15481314_1.fastq.gz - recovery_04h - SRR15481349 - SRR15481349_1.fastq.gz - SRR15481349_2.fastq.gz - SRR15481348 - SRR15481348_1.fastq.gz - SRR15481348_2.fastq.gz - SRR15481347 - SRR15481347_2.fastq.gz - SRR15481347_1.fastq.gz - heat_24h - SRR15481340 - SRR15481340_2.fastq.gz - SRR15481340_1.fastq.gz - SRR15481338 - SRR15481338_1.fastq.gz - SRR15481338_2.fastq.gz - SRR15481339 - SRR15481339_2.fastq.gz - SRR15481339_1.fastq.gz - heat_04h - SRR15481331 - SRR15481331_2.fastq.gz - SRR15481331_1.fastq.gz - SRR15481329 - SRR15481329_1.fastq.gz - SRR15481329_2.fastq.gz - SRR15481330 - SRR15481330_1.fastq.gz - SRR15481330_2.fastq.gz - recovery_02h - SRR15481344 - SRR15481344_2.fastq.gz - SRR15481344_1.fastq.gz - SRR15481346 - SRR15481346_2.fastq.gz - SRR15481346_1.fastq.gz - SRR15481345 - SRR15481345_2.fastq.gz - SRR15481345_1.fastq.gz - recovery_24h - 35CC(SRR15481355) - 35C_C_14_1.fastq.gz - 35C_C_14_2.fastq.gz - SRR15481353 - SRR15481353_1.fastq.gz - SRR15481353_2.fastq.gz - SRR15481354 - SRR15481354_1.fastq.gz - SRR15481354_2.fastq.gz - reach_control_temp - SRR15481342 - SRR15481342_1.fastq.gz - SRR15481342_2.fastq.gz - SRR15481341 - SRR15481341_1.fastq.gz - SRR15481341_2.fastq.gz - SRR15481343 - SRR15481343_1.fastq.gz - SRR15481343_2.fastq.gz - reach_high_temp - SRR15481317 - SRR15481317_2.fastq.gz - SRR15481317_1.fastq.gz - SRR15481319 - SRR15481319_1.fastq.gz - SRR15481319_2.fastq.gz - SRR15481318 - SRR15481318_2.fastq.gz - SRR15481318_1.fastq.gz - heat_00.5h - SRR15481321 - SRR15481321_2.fastq.gz - SRR15481321_1.fastq.gz - SRR15481320 - SRR15481320_2.fastq.gz - SRR15481320_1.fastq.gz - SRR15481322 - SRR15481322_2.fastq.gz - SRR15481322_1.fastq.gz - heat_02h - SRR15481326 - SRR15481326_1.fastq.gz - SRR15481326_2.fastq.gz - SRR15481327 - SRR15481327_2.fastq.gz - SRR15481327_1.fastq.gz - SRR15481328 - SRR15481328_2.fastq.gz - SRR15481328_1.fastq.gz - heat_16h - SRR15481335 - SRR15481335_2.fastq.gz - SRR15481335_1.fastq.gz - SRR15481336 - SRR15481336_2.fastq.gz - SRR15481336_1.fastq.gz - SRR15481337 - SRR15481337_1.fastq.gz - SRR15481337_2.fastq.gz
        • GSE182207_RAW
          • GSM5520696_A_3_40C_TPM.txt.gz
          • GSM5520685_B_14_35C_TPM.txt.gz
          • GSM5520724_B_12_40C_TPM.txt.gz
          • GSM5520687_A_15_35C_TPM.txt.gz
          • GSM5520677_C_11_35C_TPM.txt.gz
          • GSM5520712_B_8_40C_TPM.txt.gz
          • GSM5520675_A_11_35C_TPM.txt.gz
          • GSM5520702_A_5_40C_TPM.txt.gz
          • GSM5520664_B_7_35C_TPM.txt.gz
          • GSM5520733_B_15_40C_TPM.txt.gz
          • GSM5520682_B_13_35C_TPM.txt.gz
          • GSM5520686_C_14_35C_TPM.txt.gz
          • GSM5520681_A_13_35C_TPM.txt.gz
          • GSM5520709_B_7_40C_TPM.txt.gz
          • GSM5520648_A_2_35C_TPM.txt.gz
          • GSM5520727_B_13_40C_TPM.txt.gz
          • GSM5520647_C_1_35C_TPM.txt.gz
          • GSM5520645_A_1_35C_TPM.txt.gz
          • GSM5520718_B_10_40C_TPM.txt.gz
          • GSM5520678_A_12_35C_TPM.txt.gz
          • GSM5520679_B_12_35C_TPM.txt.gz
          • GSM5520658_B_5_35C_TPM.txt.gz
          • GSM5520720_A_11_40C_TPM.txt.gz
          • GSM5520688_B_15_35C_TPM.txt.gz
          • GSM5520657_A_5_35C_TPM.txt.gz
          • GSM5520693_A_2_40C_TPM.txt.gz
          • GSM5520662_C_6_35C_TPM.txt.gz
          • GSM5520683_C_13_35C_TPM.txt.gz
          • GSM5520705_A_6_40C_TPM.txt.gz
          • GSM5520730_B_14_40C_TPM.txt.gz
          • GSM5520722_C_11_40C_TPM.txt.gz
          • GSM5520701_C_4_40C_TPM.txt.gz
          • GSM5520668_C_8_35C_TPM.txt.gz
          • GSM5520699_A_4_40C_TPM.txt.gz
          • GSM5520711_A_8_40C_TPM.txt.gz
          • GSM5520728_C_13_40C_TPM.txt.gz
          • GSM5520714_A_9_40C_TPM.txt.gz
          • GSM5520656_C_4_35C_TPM.txt.gz
          • GSM5520723_A_12_40C_TPM.txt.gz
          • GSM5520715_B_9_40C_TPM.txt.gz
          • GSM5520646_B_1_35C_TPM.txt.gz
          • GSM5520654_A_4_35C_TPM.txt.gz
          • GSM5520666_A_8_35C_TPM.txt.gz
          • GSM5520694_B_2_40C_TPM.txt.gz
          • GSM5520692_C_1_40C_TPM.txt.gz
          • GSM5520700_B_4_40C_TPM.txt.gz
          • GSM5520650_C_2_35C_TPM.txt.gz
          • GSM5520690_A_1_40C_TPM.txt.gz
          • GSM5520672_A_10_35C_TPM.txt.gz
          • GSM5520674_C_10_35C_TPM.txt.gz
          • GSM5520660_A_6_35C_TPM.txt.gz
          • GSM5520689_C_15_35C_TPM.txt.gz
          • GSM5520719_C_10_40C_TPM.txt.gz
          • GSM5520717_A_10_40C_TPM.txt.gz
          • GSM5520713_C_8_40C_TPM.txt.gz
          • GSM5520673_B_10_35C_TPM.txt.gz
          • GSM5520661_B_6_35C_TPM.txt.gz
          • GSM5520703_B_5_40C_TPM.txt.gz
          • GSM5520655_B_4_35C_TPM.txt.gz
          • GSM5520726_A_13_40C_TPM.txt.gz
          • GSM5520731_C_14_40C_TPM.txt.gz
          • GSM5520671_C_9_35C_TPM.txt.gz
          • GSM5520729_A_14_40C_TPM.txt.gz
          • GSM5520684_A_14_35C_TPM.txt.gz
          • GSM5520659_C_5_35C_TPM.txt.gz
          • GSM5520670_B_9_35C_TPM.txt.gz
          • GSM5520676_B_11_35C_TPM.txt.gz
          • GSM5520663_A_7_35C_TPM.txt.gz
          • GSM5520649_B_2_35C_TPM.txt.gz
          • GSM5520680_C_12_35C_TPM.txt.gz
          • GSM5520691_B_1_40C_TPM.txt.gz
          • GSM5520669_A_9_35C_TPM.txt.gz
          • GSM5520698_C_3_40C_TPM.txt.gz
          • GSM5520651_A_3_35C_TPM.txt.gz
          • GSM5520667_B_8_35C_TPM.txt.gz
          • GSM5520652_B_3_35C_TPM.txt.gz
          • GSM5520716_C_9_40C_TPM.txt.gz
          • GSM5520704_C_5_40C_TPM.txt.gz
          • GSM5520695_C_2_40C_TPM.txt.gz
          • GSM5520697_B_3_40C_TPM.txt.gz
          • GSM5520707_C_6_40C_TPM.txt.gz
          • GSM5520734_C_15_40C_TPM.txt.gz
          • GSM5520665_C_7_35C_TPM.txt.gz
          • GSM5520706_B_6_40C_TPM.txt.gz
          • GSM5520653_C_3_35C_TPM.txt.gz
          • GSM5520708_A_7_40C_TPM.txt.gz
          • GSM5520721_B_11_40C_TPM.txt.gz
          • GSM5520710_C_7_40C_TPM.txt.gz
          • GSM5520732_A_15_40C_TPM.txt.gz
          • GSM5520725_C_12_40C_TPM.txt.gz
    • Growth
      • isa.assay.xlsx
      • README.md
    • Proteomics
      • isa.assay.xlsx
      • README.md
      • dataset
        • 20191105_Zhang_35C_B_sample28.raw
        • 20191101_Zhang_35C_A_sample01.raw
        • 20191113_Zhang_40C_A_sample64.raw
        • 20191105_Zhang_35C_B_sample25.raw
        • 20191116_Zhang_40C_C_sample83.raw
        • 20191113_Zhang_40C_B_sample67.raw
        • 20191107_Zhang_35C_C_sample39.raw
        • 20191113_Zhang_40C_B_sample68.raw
        • msmsScans.txt
        • 20191102_Zhang_35C_A_sample09.raw
        • 20191113_Zhang_40C_A_sample63.raw
        • 20191115_Zhang_40C_C_sample81.raw
        • 20191115_Zhang_40C_B_sample80.raw
        • 20191118_Zhang_40C_C_sample96.raw
        • 20191112_Zhang_40C_A_sample55.raw
        • 20191105_Zhang_35C_B_sample23.raw
        • 20191111_Zhang_40C_A_sample52.raw
        • 20191117_Zhang_40C_C_sample92.raw
        • 20191117_Zhang_40C_C_sample90.raw
        • 20191113_Zhang_40C_B_sample66.raw
        • 20191101_Zhang_35C_A_sample04.raw
        • 20191105_Zhang_35C_B_sample27.raw
        • 20191106_Zhang_35C_B_sample31.raw
        • 20191116_Zhang_40C_C_sample84.raw
        • 20191116_Zhang_40C_C_sample86.raw
        • 20191106_Zhang_35C_B_sample30.raw
        • 20191115_Zhang_40C_B_sample79.raw
        • 20191116_Zhang_40C_C_sample85.raw
        • 20191114_Zhang_40C_B_sample70.raw
        • 20191117_Zhang_40C_C_sample89.raw
        • 20191114_Zhang_40C_B_sample72.raw
        • 20191102_Zhang_35C_A_sample06.raw
        • 20191112_Zhang_40C_A_sample57.raw
        • 20191103_Zhang_35C_A_sample13.raw
        • 20191102_Zhang_35C_A_sample10.raw
        • 20191118_Zhang_40C_C_sample95.raw
        • 20191115_Zhang_40C_B_sample76.raw
        • 20191102_Zhang_35C_A_sample08.raw
        • 20191108_Zhang_35C_C_sample42.raw
        • 20191116_Zhang_40C_C_sample88.raw
        • 20191112_Zhang_40C_A_sample59.raw
        • 20191109_Zhang_35C_C_sample46.raw
        • 20191105_Zhang_35C_B_sample21.raw
        • 20191103_Zhang_35C_A_sample12.raw
        • 20191107_Zhang_35C_C_sample37.raw
        • 20191112_Zhang_40C_A_sample56.raw
        • 20191111_Zhang_40C_A_sample51.raw
        • 20191104_Zhang_35C_B_sample17.raw
        • 20191114_Zhang_40C_B_sample74.raw
        • 20191107_Zhang_35C_C_sample36.raw
        • 20191109_Zhang_35C_C_sample45.raw
        • 20191109_Zhang_35C_C_sample48.raw
        • 20191108_Zhang_35C_C_sample41.raw
        • 20191112_Zhang_40C_A_sample62.raw
        • 20191111_Zhang_40C_A_sample50.raw
        • 20191114_Zhang_40C_B_sample71.raw
        • 20191112_Zhang_40C_A_sample60.raw
        • 20191101_Zhang_35C_A_sample03.raw
        • 20191116_Zhang_40C_C_sample82.raw
        • 20191106_Zhang_35C_B_sample32.raw
        • 20191104_Zhang_35C_B_sample22.raw
        • checksum.txt
        • 20191111_Zhang_40C_A_sample53.raw
        • 20191117_Zhang_40C_C_sample93.raw
        • 20191108_Zhang_35C_C_sample44.raw
        • 20191117_Zhang_40C_C_sample94.raw
        • 20191103_Zhang_35C_A_sample15.raw
        • 20191103_Zhang_35C_A_sample14.raw
        • 20191107_Zhang_35C_C_sample35.raw
        • 20191107_Zhang_35C_C_sample40.raw
        • 20191112_Zhang_40C_A_sample58.raw
        • 20191102_Zhang_35C_A_sample07.raw
        • 20191103_Zhang_35C_A_sample11.raw
        • 20191103_Zhang_35C_A_sample16.raw
        • 20191106_Zhang_35C_C_sample33.raw
        • 20191107_Zhang_35C_C_sample38.raw
        • 20191114_Zhang_40C_B_sample73.raw
        • 20191104_Zhang_35C_B_sample20.raw
        • 20191108_Zhang_35C_C_sample43.raw
        • 20191109_Zhang_35C_C_sample47.raw
        • 20191111_Zhang_40C_A_sample54.raw
        • 20191111_Zhang_40C_A_sample49.raw
        • 20191115_Zhang_40C_B_sample77.raw
        • 20191117_Zhang_40C_C_sample91.raw
        • 20191114_Zhang_40C_B_sample75.raw
        • 20191116_Zhang_40C_C_sample87.raw
        • 20191105_Zhang_35C_B_sample24.raw
        • proteinGroups.txt
        • 20191101_Zhang_35C_A_sample02.raw
        • 20191106_Zhang_35C_C_sample34.raw
        • 20191114_Zhang_40C_B_sample69.raw
        • 20191112_Zhang_40C_A_sample61.raw
        • 20191105_Zhang_35C_B_sample26.raw
        • 20191102_Zhang_35C_A_sample05.raw
        • 20191104_Zhang_35C_B_sample18.raw
        • 20191115_Zhang_40C_B_sample78.raw
        • 20191106_Zhang_35C_B_sample29.raw
        • 20191113_Zhang_40C_B_sample65.raw
        • 20191104_Zhang_35C_B_sample19.raw
      • protocols
        • GradientProtocol.txt
  • studies
    • HeatstressExperiment
      • README.md
      • isa.study.xlsx
      • protocols
        • 2022-07-12_121059.png
  • publication
    • 42003_2022_3359_MOESM13_ESM.zip
    • 42003_2022_3359_MOESM7_ESM.xlsx
    • 42003_2022_3359_MOESM4_ESM.xlsx
    • 42003_2022_3359_MOESM8_ESM.xlsx
    • 42003_2022_3359_MOESM14_ESM.xlsx
    • 42003_2022_3359_MOESM6_ESM.xlsx
    • 42003_2022_3359_MOESM9_ESM.xlsx
    • 42003_2022_3359_MOESM12_ESM.zip
    • 42003_2022_3359_MOESM11_ESM.xlsx
    • 42003_2022_3359_MOESM10_ESM.xlsx
    • publication.pdf
    • 42003_2022_3359_MOESM5_ESM.xlsx