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"firstName": "Wolf B.",
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"email": "frommew@hhu.de",
"affiliation": "Heinrich-Heine-Universitat D\u00fcsseldorf, Institute for Molecular Physiology;ITbM, ;Carnegie Institution for Science, Plant Biology;Stanford University, Biology;Carnegie Institution for Science, Plant Biology;Stanford University, Biology;Carnegie Institution for Science, Plant Biology;University of T\u00fcbingen, Biology",
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}
]
},
{
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]
},
{
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]
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{
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{
"@id": "#MaterialAttributeValue/Cross-section=4",
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{
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{
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{
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{
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]
},
{
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{
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{
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{
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],
"outputs": [
{
"@id": "#Sample_CLSM_A1",
"name": "CLSM_A1"
},
{
"@id": "#Sample_CLSM_A2",
"name": "CLSM_A2"
},
{
"@id": "#Sample_CLSM_A3",
"name": "CLSM_A3"
},
{
"@id": "#Sample_CLSM_A4",
"name": "CLSM_A4"
},
{
"@id": "#Sample_CLSM_A5",
"name": "CLSM_A5"
},
{
"@id": "#Sample_CLSM_A6",
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},
{
"@id": "#Sample_CLSM_A7",
"name": "CLSM_A7"
},
{
"@id": "#Sample_CLSM_A8",
"name": "CLSM_A8"
},
{
"@id": "#Sample_CLSM_A9",
"name": "CLSM_A9"
},
{
"@id": "#Sample_CLSM_A10",
"name": "CLSM_A10"
},
{
"@id": "#Sample_CLSM_A11",
"name": "CLSM_A11"
},
{
"@id": "#Sample_CLSM_A12",
"name": "CLSM_A12"
},
{
"@id": "#Sample_CLSM_B1",
"name": "CLSM_B1"
},
{
"@id": "#Sample_CLSM_B2",
"name": "CLSM_B2"
},
{
"@id": "#Sample_CLSM_B3",
"name": "CLSM_B3"
},
{
"@id": "#Sample_CLSM_B4",
"name": "CLSM_B4"
},
{
"@id": "#Sample_CLSM_B5",
"name": "CLSM_B5"
},
{
"@id": "#Sample_CLSM_B6",
"name": "CLSM_B6"
},
{
"@id": "#Sample_CLSM_B7",
"name": "CLSM_B7"
},
{
"@id": "#Sample_CLSM_B8",
"name": "CLSM_B8"
},
{
"@id": "#Sample_CLSM_B9",
"name": "CLSM_B9"
},
{
"@id": "#Sample_CLSM_B10",
"name": "CLSM_B10"
},
{
"@id": "#Sample_CLSM_B11",
"name": "CLSM_B11"
},
{
"@id": "#Sample_CLSM_B12",
"name": "CLSM_B12"
},
{
"@id": "#Sample_CLSM_C1",
"name": "CLSM_C1"
},
{
"@id": "#Sample_CLSM_C2",
"name": "CLSM_C2"
},
{
"@id": "#Sample_CLSM_C3",
"name": "CLSM_C3"
},
{
"@id": "#Sample_CLSM_C4",
"name": "CLSM_C4"
},
{
"@id": "#Sample_CLSM_C5",
"name": "CLSM_C5"
},
{
"@id": "#Sample_CLSM_C6",
"name": "CLSM_C6"
},
{
"@id": "#Sample_CLSM_C7",
"name": "CLSM_C7"
},
{
"@id": "#Sample_CLSM_C8",
"name": "CLSM_C8"
},
{
"@id": "#Sample_CLSM_C9",
"name": "CLSM_C9"
},
{
"@id": "#Sample_CLSM_C10",
"name": "CLSM_C10"
},
{
"@id": "#Sample_CLSM_C11",
"name": "CLSM_C11"
},
{
"@id": "#Sample_CLSM_C12",
"name": "CLSM_C12"
}
]
},
{
"@id": "#Process_imaging",
"name": "imaging",
"inputs": [
{
"@id": "#Sample_CLSM_A1",
"name": "CLSM_A1"
},
{
"@id": "#Sample_CLSM_A2",
"name": "CLSM_A2"
},
{
"@id": "#Sample_CLSM_A3",
"name": "CLSM_A3"
},
{
"@id": "#Sample_CLSM_A4",
"name": "CLSM_A4"
},
{
"@id": "#Sample_CLSM_A5",
"name": "CLSM_A5"
},
{
"@id": "#Sample_CLSM_A6",
"name": "CLSM_A6"
},
{
"@id": "#Sample_CLSM_A7",
"name": "CLSM_A7"
},
{
"@id": "#Sample_CLSM_A8",
"name": "CLSM_A8"
},
{
"@id": "#Sample_CLSM_A9",
"name": "CLSM_A9"
},
{
"@id": "#Sample_CLSM_A10",
"name": "CLSM_A10"
},
{
"@id": "#Sample_CLSM_A11",
"name": "CLSM_A11"
},
{
"@id": "#Sample_CLSM_A12",
"name": "CLSM_A12"
},
{
"@id": "#Sample_CLSM_B1",
"name": "CLSM_B1"
},
{
"@id": "#Sample_CLSM_B2",
"name": "CLSM_B2"
},
{
"@id": "#Sample_CLSM_B3",
"name": "CLSM_B3"
},
{
"@id": "#Sample_CLSM_B4",
"name": "CLSM_B4"
},
{
"@id": "#Sample_CLSM_B5",
"name": "CLSM_B5"
},
{
"@id": "#Sample_CLSM_B6",
"name": "CLSM_B6"
},
{
"@id": "#Sample_CLSM_B7",
"name": "CLSM_B7"
},
{
"@id": "#Sample_CLSM_B8",
"name": "CLSM_B8"
},
{
"@id": "#Sample_CLSM_B9",
"name": "CLSM_B9"
},
{
"@id": "#Sample_CLSM_B10",
"name": "CLSM_B10"
},
{
"@id": "#Sample_CLSM_B11",
"name": "CLSM_B11"
},
{
"@id": "#Sample_CLSM_B12",
"name": "CLSM_B12"
},
{
"@id": "#Sample_CLSM_C1",
"name": "CLSM_C1"
},
{
"@id": "#Sample_CLSM_C2",
"name": "CLSM_C2"
},
{
"@id": "#Sample_CLSM_C3",
"name": "CLSM_C3"
},
{
"@id": "#Sample_CLSM_C4",
"name": "CLSM_C4"
},
{
"@id": "#Sample_CLSM_C5",
"name": "CLSM_C5"
},
{
"@id": "#Sample_CLSM_C6",
"name": "CLSM_C6"
},
{
"@id": "#Sample_CLSM_C7",
"name": "CLSM_C7"
},
{
"@id": "#Sample_CLSM_C8",
"name": "CLSM_C8"
},
{
"@id": "#Sample_CLSM_C9",
"name": "CLSM_C9"
},
{
"@id": "#Sample_CLSM_C10",
"name": "CLSM_C10"
},
{
"@id": "#Sample_CLSM_C11",
"name": "CLSM_C11"
},
{
"@id": "#Sample_CLSM_C12",
"name": "CLSM_C12"
}
],
"outputs": [
{
"@id": "CLSM_A1.czi",
"name": "CLSM_A1.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A2.czi",
"name": "CLSM_A2.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A3.czi",
"name": "CLSM_A3.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A4.czi",
"name": "CLSM_A4.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A5.czi",
"name": "CLSM_A5.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A6.czi",
"name": "CLSM_A6.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A7.czi",
"name": "CLSM_A7.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A8.czi",
"name": "CLSM_A8.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A9.czi",
"name": "CLSM_A9.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A10.czi",
"name": "CLSM_A10.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A11.czi",
"name": "CLSM_A11.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A12.czi",
"name": "CLSM_A12.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B1.czi",
"name": "CLSM_B1.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B2.czi",
"name": "CLSM_B2.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B3.czi",
"name": "CLSM_B3.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B4.czi",
"name": "CLSM_B4.czi",
"type": "Raw Data File"
},
{
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"name": "CLSM_B5.czi",
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},
{
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"name": "CLSM_B6.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B7.czi",
"name": "CLSM_B7.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B8.czi",
"name": "CLSM_B8.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B9.czi",
"name": "CLSM_B9.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B10.czi",
"name": "CLSM_B10.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B11.czi",
"name": "CLSM_B11.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B12.lsm",
"name": "CLSM_B12.lsm",
"type": "Raw Data File"
},
{
"@id": "CLSM_C1.czi",
"name": "CLSM_C1.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_C2.lsm",
"name": "CLSM_C2.lsm",
"type": "Raw Data File"
},
{
"@id": "CLSM_C3.lsm",
"name": "CLSM_C3.lsm",
"type": "Raw Data File"
},
{
"@id": "CLSM_C4.lsm",
"name": "CLSM_C4.lsm",
"type": "Raw Data File"
},
{
"@id": "CLSM_C5.czi",
"name": "CLSM_C5.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_C6.czi",
"name": "CLSM_C6.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_C7.czi",
"name": "CLSM_C7.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_C8.czi",
"name": "CLSM_C8.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_C9.czi",
"name": "CLSM_C9.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_C10.lsm",
"name": "CLSM_C10.lsm",
"type": "Raw Data File"
},
{
"@id": "CLSM_C11.lsm",
"name": "CLSM_C11.lsm",
"type": "Raw Data File"
},
{
"@id": "CLSM_C12.czi",
"name": "CLSM_C12.czi",
"type": "Raw Data File"
}
]
}
]
},
{
"filename": "assays/SEM/isa.assay.xlsx",
"@id": "assays/SEM/",
"measurementType": {
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},
"technologyType": {
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},
"technologyPlatform": "ZEISS Supra 55 VP",
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},
{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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},
{
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{
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{
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{
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{
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{
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},
{
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},
{
"@id": "SEM_C11.tif",
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},
{
"@id": "SEM_C12.tif",
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"type": "Raw Data File"
}
],
"materials": {
"samples": [
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_SEM_A1",
"name": "SEM_A1"
},
{
"@id": "#Sample_SEM_A2",
"name": "SEM_A2"
},
{
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"name": "SEM_A3"
},
{
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},
{
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},
{
"@id": "#Sample_SEM_A6",
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},
{
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},
{
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},
{
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},
{
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},
{
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"name": "SEM_A11"
},
{
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},
{
"@id": "#Sample_SEM_B1",
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},
{
"@id": "#Sample_SEM_B2",
"name": "SEM_B2"
},
{
"@id": "#Sample_SEM_B3",
"name": "SEM_B3"
},
{
"@id": "#Sample_SEM_B4",
"name": "SEM_B4"
},
{
"@id": "#Sample_SEM_B5",
"name": "SEM_B5"
},
{
"@id": "#Sample_SEM_B6",
"name": "SEM_B6"
},
{
"@id": "#Sample_SEM_B7",
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},
{
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},
{
"@id": "#Sample_SEM_B9",
"name": "SEM_B9"
},
{
"@id": "#Sample_SEM_B10",
"name": "SEM_B10"
},
{
"@id": "#Sample_SEM_B11",
"name": "SEM_B11"
},
{
"@id": "#Sample_SEM_B12",
"name": "SEM_B12"
},
{
"@id": "#Sample_SEM_C1",
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},
{
"@id": "#Sample_SEM_C2",
"name": "SEM_C2"
},
{
"@id": "#Sample_SEM_C3",
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},
{
"@id": "#Sample_SEM_C4",
"name": "SEM_C4"
},
{
"@id": "#Sample_SEM_C5",
"name": "SEM_C5"
},
{
"@id": "#Sample_SEM_C6",
"name": "SEM_C6"
},
{
"@id": "#Sample_SEM_C7",
"name": "SEM_C7"
},
{
"@id": "#Sample_SEM_C8",
"name": "SEM_C8"
},
{
"@id": "#Sample_SEM_C9",
"name": "SEM_C9"
},
{
"@id": "#Sample_SEM_C10",
"name": "SEM_C10"
},
{
"@id": "#Sample_SEM_C11",
"name": "SEM_C11"
},
{
"@id": "#Sample_SEM_C12",
"name": "SEM_C12"
}
]
},
"processSequence": [
{
"@id": "#Process_specimen",
"name": "specimen",
"executesProtocol": {
"@id": "./assays/SEM/protocols/20250909180316.md",
"uri": "./assays/SEM/protocols/20250909180316.md"
},
"inputs": [
{
"@id": "#Sample_WT-PXO99LSSmApple",
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},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
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{
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{
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{
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{
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"name": "WT-PXO99LSSmApple"
},
{
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"name": "WT-PXO99LSSmApple"
},
{
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{
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{
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{
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{
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{
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{
"@id": "#Sample_WT-PXO99LSSmApple",
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},
{
"@id": "#Sample_WT-PXO99LSSmApple",
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},
{
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},
{
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},
{
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{
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},
{
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},
{
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"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
}
],
"outputs": [
{
"@id": "#Sample_SEM_A1",
"name": "SEM_A1"
},
{
"@id": "#Sample_SEM_A2",
"name": "SEM_A2"
},
{
"@id": "#Sample_SEM_A3",
"name": "SEM_A3"
},
{
"@id": "#Sample_SEM_A4",
"name": "SEM_A4"
},
{
"@id": "#Sample_SEM_A5",
"name": "SEM_A5"
},
{
"@id": "#Sample_SEM_A6",
"name": "SEM_A6"
},
{
"@id": "#Sample_SEM_A7",
"name": "SEM_A7"
},
{
"@id": "#Sample_SEM_A8",
"name": "SEM_A8"
},
{
"@id": "#Sample_SEM_A9",
"name": "SEM_A9"
},
{
"@id": "#Sample_SEM_A10",
"name": "SEM_A10"
},
{
"@id": "#Sample_SEM_A11",
"name": "SEM_A11"
},
{
"@id": "#Sample_SEM_A12",
"name": "SEM_A12"
},
{
"@id": "#Sample_SEM_B1",
"name": "SEM_B1"
},
{
"@id": "#Sample_SEM_B2",
"name": "SEM_B2"
},
{
"@id": "#Sample_SEM_B3",
"name": "SEM_B3"
},
{
"@id": "#Sample_SEM_B4",
"name": "SEM_B4"
},
{
"@id": "#Sample_SEM_B5",
"name": "SEM_B5"
},
{
"@id": "#Sample_SEM_B6",
"name": "SEM_B6"
},
{
"@id": "#Sample_SEM_B7",
"name": "SEM_B7"
},
{
"@id": "#Sample_SEM_B8",
"name": "SEM_B8"
},
{
"@id": "#Sample_SEM_B9",
"name": "SEM_B9"
},
{
"@id": "#Sample_SEM_B10",
"name": "SEM_B10"
},
{
"@id": "#Sample_SEM_B11",
"name": "SEM_B11"
},
{
"@id": "#Sample_SEM_B12",
"name": "SEM_B12"
},
{
"@id": "#Sample_SEM_C1",
"name": "SEM_C1"
},
{
"@id": "#Sample_SEM_C2",
"name": "SEM_C2"
},
{
"@id": "#Sample_SEM_C3",
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},
{
"@id": "#Sample_SEM_C4",
"name": "SEM_C4"
},
{
"@id": "#Sample_SEM_C5",
"name": "SEM_C5"
},
{
"@id": "#Sample_SEM_C6",
"name": "SEM_C6"
},
{
"@id": "#Sample_SEM_C7",
"name": "SEM_C7"
},
{
"@id": "#Sample_SEM_C8",
"name": "SEM_C8"
},
{
"@id": "#Sample_SEM_C9",
"name": "SEM_C9"
},
{
"@id": "#Sample_SEM_C10",
"name": "SEM_C10"
},
{
"@id": "#Sample_SEM_C11",
"name": "SEM_C11"
},
{
"@id": "#Sample_SEM_C12",
"name": "SEM_C12"
}
]
},
{
"@id": "#Process_imaging",
"name": "imaging",
"inputs": [
{
"@id": "#Sample_SEM_A1",
"name": "SEM_A1"
},
{
"@id": "#Sample_SEM_A2",
"name": "SEM_A2"
},
{
"@id": "#Sample_SEM_A3",
"name": "SEM_A3"
},
{
"@id": "#Sample_SEM_A4",
"name": "SEM_A4"
},
{
"@id": "#Sample_SEM_A5",
"name": "SEM_A5"
},
{
"@id": "#Sample_SEM_A6",
"name": "SEM_A6"
},
{
"@id": "#Sample_SEM_A7",
"name": "SEM_A7"
},
{
"@id": "#Sample_SEM_A8",
"name": "SEM_A8"
},
{
"@id": "#Sample_SEM_A9",
"name": "SEM_A9"
},
{
"@id": "#Sample_SEM_A10",
"name": "SEM_A10"
},
{
"@id": "#Sample_SEM_A11",
"name": "SEM_A11"
},
{
"@id": "#Sample_SEM_A12",
"name": "SEM_A12"
},
{
"@id": "#Sample_SEM_B1",
"name": "SEM_B1"
},
{
"@id": "#Sample_SEM_B2",
"name": "SEM_B2"
},
{
"@id": "#Sample_SEM_B3",
"name": "SEM_B3"
},
{
"@id": "#Sample_SEM_B4",
"name": "SEM_B4"
},
{
"@id": "#Sample_SEM_B5",
"name": "SEM_B5"
},
{
"@id": "#Sample_SEM_B6",
"name": "SEM_B6"
},
{
"@id": "#Sample_SEM_B7",
"name": "SEM_B7"
},
{
"@id": "#Sample_SEM_B8",
"name": "SEM_B8"
},
{
"@id": "#Sample_SEM_B9",
"name": "SEM_B9"
},
{
"@id": "#Sample_SEM_B10",
"name": "SEM_B10"
},
{
"@id": "#Sample_SEM_B11",
"name": "SEM_B11"
},
{
"@id": "#Sample_SEM_B12",
"name": "SEM_B12"
},
{
"@id": "#Sample_SEM_C1",
"name": "SEM_C1"
},
{
"@id": "#Sample_SEM_C2",
"name": "SEM_C2"
},
{
"@id": "#Sample_SEM_C3",
"name": "SEM_C3"
},
{
"@id": "#Sample_SEM_C4",
"name": "SEM_C4"
},
{
"@id": "#Sample_SEM_C5",
"name": "SEM_C5"
},
{
"@id": "#Sample_SEM_C6",
"name": "SEM_C6"
},
{
"@id": "#Sample_SEM_C7",
"name": "SEM_C7"
},
{
"@id": "#Sample_SEM_C8",
"name": "SEM_C8"
},
{
"@id": "#Sample_SEM_C9",
"name": "SEM_C9"
},
{
"@id": "#Sample_SEM_C10",
"name": "SEM_C10"
},
{
"@id": "#Sample_SEM_C11",
"name": "SEM_C11"
},
{
"@id": "#Sample_SEM_C12",
"name": "SEM_C12"
}
],
"outputs": [
{
"@id": "SEM_A1.tif",
"name": "SEM_A1.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A2.tif",
"name": "SEM_A2.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A3.tif",
"name": "SEM_A3.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A4.tif",
"name": "SEM_A4.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A5.tif",
"name": "SEM_A5.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A6.tif",
"name": "SEM_A6.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A7.tif",
"name": "SEM_A7.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A8.tif",
"name": "SEM_A8.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A9.tif",
"name": "SEM_A9.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A10.tif",
"name": "SEM_A10.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A11.tif",
"name": "SEM_A11.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A12.tif",
"name": "SEM_A12.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B1.tif",
"name": "SEM_B1.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B2.tif",
"name": "SEM_B2.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B3.tif",
"name": "SEM_B3.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B4.tif",
"name": "SEM_B4.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B5.tif",
"name": "SEM_B5.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B6.tif",
"name": "SEM_B6.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B7.tif",
"name": "SEM_B7.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B8.tif",
"name": "SEM_B8.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B9.tif",
"name": "SEM_B9.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B10.tif",
"name": "SEM_B10.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B11.tif",
"name": "SEM_B11.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B12.tif",
"name": "SEM_B12.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C1.tif",
"name": "SEM_C1.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C2.tif",
"name": "SEM_C2.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C3.tif",
"name": "SEM_C3.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C4.tif",
"name": "SEM_C4.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C5.tif",
"name": "SEM_C5.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C6.tif",
"name": "SEM_C6.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C7.tif",
"name": "SEM_C7.tif",
"type": "Raw Data File"
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],
"outputs": [
{
"@id": "#Sample_CLSM_A1",
"name": "CLSM_A1"
},
{
"@id": "#Sample_CLSM_A2",
"name": "CLSM_A2"
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{
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{
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{
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{
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{
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{
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},
{
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"name": "CLSM_A9"
},
{
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},
{
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},
{
"@id": "#Sample_CLSM_A12",
"name": "CLSM_A12"
},
{
"@id": "#Sample_CLSM_B1",
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},
{
"@id": "#Sample_CLSM_B2",
"name": "CLSM_B2"
},
{
"@id": "#Sample_CLSM_B3",
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},
{
"@id": "#Sample_CLSM_B4",
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},
{
"@id": "#Sample_CLSM_B5",
"name": "CLSM_B5"
},
{
"@id": "#Sample_CLSM_B6",
"name": "CLSM_B6"
},
{
"@id": "#Sample_CLSM_B7",
"name": "CLSM_B7"
},
{
"@id": "#Sample_CLSM_B8",
"name": "CLSM_B8"
},
{
"@id": "#Sample_CLSM_B9",
"name": "CLSM_B9"
},
{
"@id": "#Sample_CLSM_B10",
"name": "CLSM_B10"
},
{
"@id": "#Sample_CLSM_B11",
"name": "CLSM_B11"
},
{
"@id": "#Sample_CLSM_B12",
"name": "CLSM_B12"
},
{
"@id": "#Sample_CLSM_C1",
"name": "CLSM_C1"
},
{
"@id": "#Sample_CLSM_C2",
"name": "CLSM_C2"
},
{
"@id": "#Sample_CLSM_C3",
"name": "CLSM_C3"
},
{
"@id": "#Sample_CLSM_C4",
"name": "CLSM_C4"
},
{
"@id": "#Sample_CLSM_C5",
"name": "CLSM_C5"
},
{
"@id": "#Sample_CLSM_C6",
"name": "CLSM_C6"
},
{
"@id": "#Sample_CLSM_C7",
"name": "CLSM_C7"
},
{
"@id": "#Sample_CLSM_C8",
"name": "CLSM_C8"
},
{
"@id": "#Sample_CLSM_C9",
"name": "CLSM_C9"
},
{
"@id": "#Sample_CLSM_C10",
"name": "CLSM_C10"
},
{
"@id": "#Sample_CLSM_C11",
"name": "CLSM_C11"
},
{
"@id": "#Sample_CLSM_C12",
"name": "CLSM_C12"
}
]
},
{
"@id": "#Process_imaging",
"name": "imaging",
"inputs": [
{
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"name": "CLSM_A1"
},
{
"@id": "#Sample_CLSM_A2",
"name": "CLSM_A2"
},
{
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},
{
"@id": "#Sample_CLSM_A4",
"name": "CLSM_A4"
},
{
"@id": "#Sample_CLSM_A5",
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},
{
"@id": "#Sample_CLSM_A6",
"name": "CLSM_A6"
},
{
"@id": "#Sample_CLSM_A7",
"name": "CLSM_A7"
},
{
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},
{
"@id": "#Sample_CLSM_A9",
"name": "CLSM_A9"
},
{
"@id": "#Sample_CLSM_A10",
"name": "CLSM_A10"
},
{
"@id": "#Sample_CLSM_A11",
"name": "CLSM_A11"
},
{
"@id": "#Sample_CLSM_A12",
"name": "CLSM_A12"
},
{
"@id": "#Sample_CLSM_B1",
"name": "CLSM_B1"
},
{
"@id": "#Sample_CLSM_B2",
"name": "CLSM_B2"
},
{
"@id": "#Sample_CLSM_B3",
"name": "CLSM_B3"
},
{
"@id": "#Sample_CLSM_B4",
"name": "CLSM_B4"
},
{
"@id": "#Sample_CLSM_B5",
"name": "CLSM_B5"
},
{
"@id": "#Sample_CLSM_B6",
"name": "CLSM_B6"
},
{
"@id": "#Sample_CLSM_B7",
"name": "CLSM_B7"
},
{
"@id": "#Sample_CLSM_B8",
"name": "CLSM_B8"
},
{
"@id": "#Sample_CLSM_B9",
"name": "CLSM_B9"
},
{
"@id": "#Sample_CLSM_B10",
"name": "CLSM_B10"
},
{
"@id": "#Sample_CLSM_B11",
"name": "CLSM_B11"
},
{
"@id": "#Sample_CLSM_B12",
"name": "CLSM_B12"
},
{
"@id": "#Sample_CLSM_C1",
"name": "CLSM_C1"
},
{
"@id": "#Sample_CLSM_C2",
"name": "CLSM_C2"
},
{
"@id": "#Sample_CLSM_C3",
"name": "CLSM_C3"
},
{
"@id": "#Sample_CLSM_C4",
"name": "CLSM_C4"
},
{
"@id": "#Sample_CLSM_C5",
"name": "CLSM_C5"
},
{
"@id": "#Sample_CLSM_C6",
"name": "CLSM_C6"
},
{
"@id": "#Sample_CLSM_C7",
"name": "CLSM_C7"
},
{
"@id": "#Sample_CLSM_C8",
"name": "CLSM_C8"
},
{
"@id": "#Sample_CLSM_C9",
"name": "CLSM_C9"
},
{
"@id": "#Sample_CLSM_C10",
"name": "CLSM_C10"
},
{
"@id": "#Sample_CLSM_C11",
"name": "CLSM_C11"
},
{
"@id": "#Sample_CLSM_C12",
"name": "CLSM_C12"
}
],
"outputs": [
{
"@id": "CLSM_A1.czi",
"name": "CLSM_A1.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A2.czi",
"name": "CLSM_A2.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A3.czi",
"name": "CLSM_A3.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A4.czi",
"name": "CLSM_A4.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A5.czi",
"name": "CLSM_A5.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A6.czi",
"name": "CLSM_A6.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A7.czi",
"name": "CLSM_A7.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A8.czi",
"name": "CLSM_A8.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A9.czi",
"name": "CLSM_A9.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A10.czi",
"name": "CLSM_A10.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A11.czi",
"name": "CLSM_A11.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_A12.czi",
"name": "CLSM_A12.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B1.czi",
"name": "CLSM_B1.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B2.czi",
"name": "CLSM_B2.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B3.czi",
"name": "CLSM_B3.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B4.czi",
"name": "CLSM_B4.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B5.czi",
"name": "CLSM_B5.czi",
"type": "Raw Data File"
},
{
"@id": "CLSM_B6.czi",
"name": "CLSM_B6.czi",
"type": "Raw Data File"
},
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{
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"name": "Series047_488_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series057_488_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
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},
{
"@id": "#Sample_Series045_514_WithChloroplasts_4thLeaf_Leaf3_Abaxial",
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},
{
"@id": "#Sample_Series055_514_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series055_514_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series044_514_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial",
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},
{
"@id": "#Sample_Series054_514_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
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},
{
"@id": "#Sample_Series042_561_WithChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series042_561_WithChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series052_561_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series052_561_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series043_561_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial",
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{
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],
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{
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{
"@id": "#Sample_SEM_C9",
"name": "SEM_C9"
},
{
"@id": "#Sample_SEM_C10",
"name": "SEM_C10"
},
{
"@id": "#Sample_SEM_C11",
"name": "SEM_C11"
},
{
"@id": "#Sample_SEM_C12",
"name": "SEM_C12"
}
]
},
"processSequence": [
{
"@id": "#Process_specimen",
"name": "specimen",
"executesProtocol": {
"@id": "./assays/SEM/protocols/20250909180316.md",
"uri": "./assays/SEM/protocols/20250909180316.md"
},
"inputs": [
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
},
{
"@id": "#Sample_WT-PXO99LSSmApple",
"name": "WT-PXO99LSSmApple"
}
],
"outputs": [
{
"@id": "#Sample_SEM_A1",
"name": "SEM_A1"
},
{
"@id": "#Sample_SEM_A2",
"name": "SEM_A2"
},
{
"@id": "#Sample_SEM_A3",
"name": "SEM_A3"
},
{
"@id": "#Sample_SEM_A4",
"name": "SEM_A4"
},
{
"@id": "#Sample_SEM_A5",
"name": "SEM_A5"
},
{
"@id": "#Sample_SEM_A6",
"name": "SEM_A6"
},
{
"@id": "#Sample_SEM_A7",
"name": "SEM_A7"
},
{
"@id": "#Sample_SEM_A8",
"name": "SEM_A8"
},
{
"@id": "#Sample_SEM_A9",
"name": "SEM_A9"
},
{
"@id": "#Sample_SEM_A10",
"name": "SEM_A10"
},
{
"@id": "#Sample_SEM_A11",
"name": "SEM_A11"
},
{
"@id": "#Sample_SEM_A12",
"name": "SEM_A12"
},
{
"@id": "#Sample_SEM_B1",
"name": "SEM_B1"
},
{
"@id": "#Sample_SEM_B2",
"name": "SEM_B2"
},
{
"@id": "#Sample_SEM_B3",
"name": "SEM_B3"
},
{
"@id": "#Sample_SEM_B4",
"name": "SEM_B4"
},
{
"@id": "#Sample_SEM_B5",
"name": "SEM_B5"
},
{
"@id": "#Sample_SEM_B6",
"name": "SEM_B6"
},
{
"@id": "#Sample_SEM_B7",
"name": "SEM_B7"
},
{
"@id": "#Sample_SEM_B8",
"name": "SEM_B8"
},
{
"@id": "#Sample_SEM_B9",
"name": "SEM_B9"
},
{
"@id": "#Sample_SEM_B10",
"name": "SEM_B10"
},
{
"@id": "#Sample_SEM_B11",
"name": "SEM_B11"
},
{
"@id": "#Sample_SEM_B12",
"name": "SEM_B12"
},
{
"@id": "#Sample_SEM_C1",
"name": "SEM_C1"
},
{
"@id": "#Sample_SEM_C2",
"name": "SEM_C2"
},
{
"@id": "#Sample_SEM_C3",
"name": "SEM_C3"
},
{
"@id": "#Sample_SEM_C4",
"name": "SEM_C4"
},
{
"@id": "#Sample_SEM_C5",
"name": "SEM_C5"
},
{
"@id": "#Sample_SEM_C6",
"name": "SEM_C6"
},
{
"@id": "#Sample_SEM_C7",
"name": "SEM_C7"
},
{
"@id": "#Sample_SEM_C8",
"name": "SEM_C8"
},
{
"@id": "#Sample_SEM_C9",
"name": "SEM_C9"
},
{
"@id": "#Sample_SEM_C10",
"name": "SEM_C10"
},
{
"@id": "#Sample_SEM_C11",
"name": "SEM_C11"
},
{
"@id": "#Sample_SEM_C12",
"name": "SEM_C12"
}
]
},
{
"@id": "#Process_imaging",
"name": "imaging",
"inputs": [
{
"@id": "#Sample_SEM_A1",
"name": "SEM_A1"
},
{
"@id": "#Sample_SEM_A2",
"name": "SEM_A2"
},
{
"@id": "#Sample_SEM_A3",
"name": "SEM_A3"
},
{
"@id": "#Sample_SEM_A4",
"name": "SEM_A4"
},
{
"@id": "#Sample_SEM_A5",
"name": "SEM_A5"
},
{
"@id": "#Sample_SEM_A6",
"name": "SEM_A6"
},
{
"@id": "#Sample_SEM_A7",
"name": "SEM_A7"
},
{
"@id": "#Sample_SEM_A8",
"name": "SEM_A8"
},
{
"@id": "#Sample_SEM_A9",
"name": "SEM_A9"
},
{
"@id": "#Sample_SEM_A10",
"name": "SEM_A10"
},
{
"@id": "#Sample_SEM_A11",
"name": "SEM_A11"
},
{
"@id": "#Sample_SEM_A12",
"name": "SEM_A12"
},
{
"@id": "#Sample_SEM_B1",
"name": "SEM_B1"
},
{
"@id": "#Sample_SEM_B2",
"name": "SEM_B2"
},
{
"@id": "#Sample_SEM_B3",
"name": "SEM_B3"
},
{
"@id": "#Sample_SEM_B4",
"name": "SEM_B4"
},
{
"@id": "#Sample_SEM_B5",
"name": "SEM_B5"
},
{
"@id": "#Sample_SEM_B6",
"name": "SEM_B6"
},
{
"@id": "#Sample_SEM_B7",
"name": "SEM_B7"
},
{
"@id": "#Sample_SEM_B8",
"name": "SEM_B8"
},
{
"@id": "#Sample_SEM_B9",
"name": "SEM_B9"
},
{
"@id": "#Sample_SEM_B10",
"name": "SEM_B10"
},
{
"@id": "#Sample_SEM_B11",
"name": "SEM_B11"
},
{
"@id": "#Sample_SEM_B12",
"name": "SEM_B12"
},
{
"@id": "#Sample_SEM_C1",
"name": "SEM_C1"
},
{
"@id": "#Sample_SEM_C2",
"name": "SEM_C2"
},
{
"@id": "#Sample_SEM_C3",
"name": "SEM_C3"
},
{
"@id": "#Sample_SEM_C4",
"name": "SEM_C4"
},
{
"@id": "#Sample_SEM_C5",
"name": "SEM_C5"
},
{
"@id": "#Sample_SEM_C6",
"name": "SEM_C6"
},
{
"@id": "#Sample_SEM_C7",
"name": "SEM_C7"
},
{
"@id": "#Sample_SEM_C8",
"name": "SEM_C8"
},
{
"@id": "#Sample_SEM_C9",
"name": "SEM_C9"
},
{
"@id": "#Sample_SEM_C10",
"name": "SEM_C10"
},
{
"@id": "#Sample_SEM_C11",
"name": "SEM_C11"
},
{
"@id": "#Sample_SEM_C12",
"name": "SEM_C12"
}
],
"outputs": [
{
"@id": "SEM_A1.tif",
"name": "SEM_A1.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A2.tif",
"name": "SEM_A2.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A3.tif",
"name": "SEM_A3.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A4.tif",
"name": "SEM_A4.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A5.tif",
"name": "SEM_A5.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A6.tif",
"name": "SEM_A6.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A7.tif",
"name": "SEM_A7.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A8.tif",
"name": "SEM_A8.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A9.tif",
"name": "SEM_A9.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A10.tif",
"name": "SEM_A10.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A11.tif",
"name": "SEM_A11.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_A12.tif",
"name": "SEM_A12.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B1.tif",
"name": "SEM_B1.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B2.tif",
"name": "SEM_B2.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B3.tif",
"name": "SEM_B3.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B4.tif",
"name": "SEM_B4.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B5.tif",
"name": "SEM_B5.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B6.tif",
"name": "SEM_B6.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B7.tif",
"name": "SEM_B7.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B8.tif",
"name": "SEM_B8.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B9.tif",
"name": "SEM_B9.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B10.tif",
"name": "SEM_B10.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B11.tif",
"name": "SEM_B11.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_B12.tif",
"name": "SEM_B12.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C1.tif",
"name": "SEM_C1.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C2.tif",
"name": "SEM_C2.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C3.tif",
"name": "SEM_C3.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C4.tif",
"name": "SEM_C4.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C5.tif",
"name": "SEM_C5.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C6.tif",
"name": "SEM_C6.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C7.tif",
"name": "SEM_C7.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C8.tif",
"name": "SEM_C8.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C9.tif",
"name": "SEM_C9.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C10.tif",
"name": "SEM_C10.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C11.tif",
"name": "SEM_C11.tif",
"type": "Raw Data File"
},
{
"@id": "SEM_C12.tif",
"name": "SEM_C12.tif",
"type": "Raw Data File"
}
]
}
]
}
]
},
{
"@id": "studies/Rice-lines/",
"filename": "studies/Rice-lines/isa.study.xlsx",
"identifier": "Rice-lines",
"protocols": [
{
"@id": "#Protocol_./studies/Rice-lines/protocols/Plantmaterial.md",
"name": "./studies/Rice-lines/protocols/Plantmaterial.md",
"protocolType": {
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"annotationValue": "plant growth protocol",
"termSource": "DPBO",
"termAccession": "http://purl.org/nfdi4plants/ontology/dpbo/DPBO_1000164"
},
"parameters": [
{
"@id": "#ProtocolParameter/PECO:0007231",
"parameterName": {
"@id": "PECO:0007231",
"annotationValue": "study type",
"termSource": "PECO",
"termAccession": "PECO:0007231"
}
},
{
"@id": "#ProtocolParameter/DPBO:0000041",
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"@id": "DPBO:0000041",
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"termAccession": "DPBO:0000041"
}
},
{
"@id": "#ProtocolParameter/PECO:0007224",
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"@id": "PECO:0007224",
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"termSource": "PECO",
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}
},
{
"@id": "#ProtocolParameter/DPBO:0000005",
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"termSource": "DPBO",
"termAccession": "DPBO:0000005"
}
},
{
"@id": "#ProtocolParameter/DPBO:0000007",
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"@id": "DPBO:0000007",
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"termSource": "DPBO",
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}
}
]
}
],
"materials": {
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{
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"@id": "#MaterialAttributeValue/organism=Oryza sativa Japonica Group",
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}
},
"value": {
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}
},
{
"@id": "#MaterialAttributeValue/genotype=OsSWEET11:gOsSWEET11-GUSplus",
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},
{
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}
},
"value": {
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}
},
{
"@id": "#MaterialAttributeValue/generation=T4",
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},
"value": {
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}
},
{
"@id": "#MaterialAttributeValue/Resistance ratio=1.0",
"category": {
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}
},
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}
]
},
{
"@id": "#Source_event10",
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},
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},
{
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},
{
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}
},
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}
},
{
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},
"value": {
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}
},
{
"@id": "#MaterialAttributeValue/Resistance ratio=1.1",
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"characteristicType": {
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}
},
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}
]
},
{
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}
},
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}
},
{
"@id": "#MaterialAttributeValue/genotype=wild type",
"category": {
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"@id": "#MaterialAttribute/NCIT:C93651",
"characteristicType": {
"@id": "NCIT:C93651",
"annotationValue": "Repetition Number",
"termSource": "NCIT",
"termAccession": "NCIT:C93651"
}
},
"value": {
"@id": "#UserTerm_C",
"annotationValue": "C"
}
},
{
"@id": "#MaterialAttributeValue/Excitation Wavelength=561",
"category": {
"@id": "#MaterialAttribute/NCIT:C204095",
"characteristicType": {
"@id": "NCIT:C204095",
"annotationValue": "Excitation Wavelength",
"termSource": "NCIT",
"termAccession": "NCIT:C204095"
}
},
"value": {
"@id": "#UserTerm_561",
"annotationValue": "561"
}
},
{
"@id": "#MaterialAttributeValue/chloroplasts=yes ",
"category": {
"@id": "#MaterialAttribute/C:9824",
"characteristicType": {
"@id": "C:9824",
"annotationValue": "chloroplasts",
"termSource": "C",
"termAccession": "C:9824"
}
},
"value": {
"@id": "#UserTerm_yes_",
"annotationValue": "yes "
}
}
]
},
{
"@id": "#Sample_WT-plant",
"name": "WT-plant",
"characteristics": [
{
"@id": "#MaterialAttributeValue/Repetition Number=C",
"category": {
"@id": "#MaterialAttribute/NCIT:C93651",
"characteristicType": {
"@id": "NCIT:C93651",
"annotationValue": "Repetition Number",
"termSource": "NCIT",
"termAccession": "NCIT:C93651"
}
},
"value": {
"@id": "#UserTerm_C",
"annotationValue": "C"
}
},
{
"@id": "#MaterialAttributeValue/Excitation Wavelength=561",
"category": {
"@id": "#MaterialAttribute/NCIT:C204095",
"characteristicType": {
"@id": "NCIT:C204095",
"annotationValue": "Excitation Wavelength",
"termSource": "NCIT",
"termAccession": "NCIT:C204095"
}
},
"value": {
"@id": "#UserTerm_561",
"annotationValue": "561"
}
},
{
"@id": "#MaterialAttributeValue/chloroplasts=no ",
"category": {
"@id": "#MaterialAttribute/C:9824",
"characteristicType": {
"@id": "C:9824",
"annotationValue": "chloroplasts",
"termSource": "C",
"termAccession": "C:9824"
}
},
"value": {
"@id": "#UserTerm_no_",
"annotationValue": "no "
}
}
]
}
],
"outputs": [
{
"@id": "#Sample_Series019_405_WithChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series019_405_WithChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series020_405_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series020_405_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series018_458_WithChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series018_458_WithChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series017_458_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series017_458_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series015_488_WithChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series015_488_WithChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series016_488_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series016_488_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series014_514_WithChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series014_514_WithChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series013_514_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series013_514_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series011_561_WithChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series011_561_WithChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series012_561_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series012_561_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series039_405_WithChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series039_405_WithChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series040_405_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series040_405_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series038_458_WithChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series038_458_WithChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series037_458_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series037_458_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series035_488_WithChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series035_488_WithChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series036_488_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series036_488_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series034_514_WithChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series034_514_WithChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series033_514_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series033_514_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series031_561_WithChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series031_561_WithChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series032_561_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series032_561_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series060_405_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series060_405_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series061_405_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series061_405_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series059_458_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series059_458_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series058_458_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series058_458_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series056_488_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series056_488_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series057_488_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series057_488_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series055_514_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series055_514_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series054_514_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series054_514_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series052_561_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series052_561_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series053_561_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series053_561_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial"
}
]
},
{
"@id": "#Process_Lambda_scans",
"name": "Lambda scans",
"executesProtocol": {
"@id": "./assays/Lambda scan/protocols/20250905175924.md",
"uri": "./assays/Lambda scan/protocols/20250905175924.md"
},
"inputs": [
{
"@id": "#Sample_Series019_405_WithChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series019_405_WithChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series005_405_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial",
"name": "Series005_405_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial"
},
{
"@id": "#Sample_Series020_405_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series020_405_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series010_458_WithChloroplasts_4thLeaf_Leaf1_Abaxial",
"name": "Series010_458_WithChloroplasts_4thLeaf_Leaf1_Abaxial"
},
{
"@id": "#Sample_Series018_458_WithChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series018_458_WithChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series009_458_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial",
"name": "Series009_458_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial"
},
{
"@id": "#Sample_Series017_458_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series017_458_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series006_488_WithChloroplasts_4thLeaf_Leaf1_Abaxial",
"name": "Series006_488_WithChloroplasts_4thLeaf_Leaf1_Abaxial"
},
{
"@id": "#Sample_Series015_488_WithChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series015_488_WithChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series007_488_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial",
"name": "Series007_488_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial"
},
{
"@id": "#Sample_Series016_488_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series016_488_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series005_514_WithChloroplasts_4thLeaf_Leaf1_Abaxial",
"name": "Series005_514_WithChloroplasts_4thLeaf_Leaf1_Abaxial"
},
{
"@id": "#Sample_Series014_514_WithChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series014_514_WithChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series004_514_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial",
"name": "Series004_514_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial"
},
{
"@id": "#Sample_Series013_514_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series013_514_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series002_561_WithChloroplasts_4thLeaf_Leaf1_Abaxial",
"name": "Series002_561_WithChloroplasts_4thLeaf_Leaf1_Abaxial"
},
{
"@id": "#Sample_Series011_561_WithChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series011_561_WithChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series003_561_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial",
"name": "Series003_561_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial"
},
{
"@id": "#Sample_Series012_561_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial",
"name": "Series012_561_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial"
},
{
"@id": "#Sample_Series029_405_WithChloroplasts_4thLeaf_Leaf2_Abaxial",
"name": "Series029_405_WithChloroplasts_4thLeaf_Leaf2_Abaxial"
},
{
"@id": "#Sample_Series039_405_WithChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series039_405_WithChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series030_405_WithoutChloroplasts_4thLeaf_Leaf2_Abaxial",
"name": "Series030_405_WithoutChloroplasts_4thLeaf_Leaf2_Abaxial"
},
{
"@id": "#Sample_Series040_405_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series040_405_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series028_458_WithChloroplasts_4thLeaf_Leaf2_Abaxial",
"name": "Series028_458_WithChloroplasts_4thLeaf_Leaf2_Abaxial"
},
{
"@id": "#Sample_Series038_458_WithChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series038_458_WithChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series027_458_WithoutChloroplasts_4thLeaf_Leaf2_Abaxial",
"name": "Series027_458_WithoutChloroplasts_4thLeaf_Leaf2_Abaxial"
},
{
"@id": "#Sample_Series037_458_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series037_458_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series025_488_WithChloroplasts_4thLeaf_Leaf2_Abaxial",
"name": "Series025_488_WithChloroplasts_4thLeaf_Leaf2_Abaxial"
},
{
"@id": "#Sample_Series035_488_WithChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series035_488_WithChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series026_488_WithoutChloroplasts_4thLeaf_Leaf2_Abaxial",
"name": "Series026_488_WithoutChloroplasts_4thLeaf_Leaf2_Abaxial"
},
{
"@id": "#Sample_Series036_488_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series036_488_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series024_514_WithChloroplasts_4thLeaf_Leaf2_Abaxial",
"name": "Series024_514_WithChloroplasts_4thLeaf_Leaf2_Abaxial"
},
{
"@id": "#Sample_Series034_514_WithChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series034_514_WithChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series023_514_WithoutChloroplasts_4thLeaf_Leaf2_Abaxial",
"name": "Series023_514_WithoutChloroplasts_4thLeaf_Leaf2_Abaxial"
},
{
"@id": "#Sample_Series033_514_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series033_514_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series021_561_WithChloroplasts_4thLeaf_Leaf2_Abaxial",
"name": "Series021_561_WithChloroplasts_4thLeaf_Leaf2_Abaxial"
},
{
"@id": "#Sample_Series031_561_WithChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series031_561_WithChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series022_561_WithoutChloroplasts_4thLeaf_Leaf2_Abaxial",
"name": "Series022_561_WithoutChloroplasts_4thLeaf_Leaf2_Abaxial"
},
{
"@id": "#Sample_Series032_561_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial",
"name": "Series032_561_WithoutChloroplasts_4thLeaf_Leaf2_Adaxial"
},
{
"@id": "#Sample_Series050_405_WithChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series050_405_WithChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series060_405_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series060_405_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series051_405_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series051_405_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series061_405_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series061_405_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series049_458_WithChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series049_458_WithChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series059_458_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series059_458_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series048_458_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series048_458_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series058_458_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series058_458_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series046_488_WithChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series046_488_WithChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series056_488_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series056_488_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series047_488_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series047_488_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series057_488_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series057_488_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series045_514_WithChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series045_514_WithChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series055_514_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series055_514_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series044_514_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series044_514_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series054_514_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series054_514_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series042_561_WithChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series042_561_WithChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series052_561_WithChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series052_561_WithChloroplasts_4thLeaf_Leaf3_Adaxial"
},
{
"@id": "#Sample_Series043_561_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial",
"name": "Series043_561_WithoutChloroplasts_4thLeaf_Leaf3_Abaxial"
},
{
"@id": "#Sample_Series053_561_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial",
"name": "Series053_561_WithoutChloroplasts_4thLeaf_Leaf3_Adaxial"
}
],
"outputs": [
{
"@id": "Series019_405_WithChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"name": "Series019_405_WithChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series005_405_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"name": "Series005_405_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series020_405_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"name": "Series020_405_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series010_458_WithChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"name": "Series010_458_WithChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series018_458_WithChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"name": "Series018_458_WithChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series009_458_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"name": "Series009_458_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series017_458_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"name": "Series017_458_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series006_488_WithChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"name": "Series006_488_WithChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series015_488_WithChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"name": "Series015_488_WithChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series007_488_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"name": "Series007_488_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series016_488_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"name": "Series016_488_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series005_514_WithChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"name": "Series005_514_WithChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series014_514_WithChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"name": "Series014_514_WithChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series004_514_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"name": "Series004_514_WithoutChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series013_514_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"name": "Series013_514_WithoutChloroplasts_4thLeaf_Leaf1_Adaxial.csv",
"type": "Raw Data File"
},
{
"@id": "Series002_561_WithChloroplasts_4thLeaf_Leaf1_Abaxial.csv",
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},
{
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{
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{
"@id": "#Sample_PXO99_LSSmApple_highsalinity",
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{
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},
{
"@id": "#Sample_PXO99_LSSmApple_highsalinity",
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}
]
},
{
"@id": "#Sample_PXO99_LSSmApple_highsalinity",
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{
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},
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}
]
},
{
"@id": "#Sample_PXO99_LSSmApple_highOD",
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{
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}
}
]
},
{
"@id": "#Sample_PXO99_LSSmApple_highOD",
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{
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}
]
},
{
"@id": "#Sample_PXO99_LSSmApple_highOD",
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{
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]
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{
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{
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{
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{
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{
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{
"@id": "#Sample_PXO99_LSSmApple_highsalinity",
"name": "PXO99_LSSmApple_highsalinity",
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{
"@id": "#MaterialAttributeValue/length=< 5 \u00b5m",
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}
]
},
{
"@id": "#Sample_PXO99_LSSmApple_highsalinity",
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{
"@id": "#MaterialAttributeValue/length=5-10 \u00b5m",
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}
},
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}
]
},
{
"@id": "#Sample_PXO99_LSSmApple_highsalinity",
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{
"@id": "#MaterialAttributeValue/length=> 10 \u00b5m",
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},
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}
}
]
},
{
"@id": "#Sample_PXO99_LSSmApple_highOD",
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{
"@id": "#MaterialAttributeValue/length=< 5 \u00b5m",
"category": {
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}
},
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}
]
},
{
"@id": "#Sample_PXO99_LSSmApple_highOD",
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{
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{
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}
},
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}
],
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"name": "PXO99_LSSmApple_highsalinity_rod"
},
{
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},
{
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},
{
"@id": "#Sample_PXO99_LSSmApple_highOD_rod",
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},
{
"@id": "#Sample_PXO99_LSSmApple_highOD_int",
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},
{
"@id": "#Sample_PXO99_LSSmApple_highOD_fil",
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}
]
}
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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{
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},
{
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{
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{
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},
{
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{
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{
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{
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{
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{
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},
{
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{
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{
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{
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{
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{
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{
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{
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],
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{
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],
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"inputs": [
{
"@id": "#Sample_PXO99_LSSmApple_highsalinity",
"name": "PXO99_LSSmApple_highsalinity"
}
],
"outputs": [
{
"@id": "#Sample_C1",
"name": "C1"
}
]
},
{
"@id": "#Process_imaging",
"name": "imaging",
"executesProtocol": {
"@id": "./assays/transmission/protocols/20250905175734.md",
"uri": "./assays/transmission/protocols/20250905175734.md"
},
"inputs": [
{
"@id": "#Sample_A1",
"name": "A1"
},
{
"@id": "#Sample_B1",
"name": "B1"
},
{
"@id": "#Sample_C1",
"name": "C1"
}
],
"outputs": [
{
"@id": "A1.tif",
"name": "A1.tif",
"type": "Raw Data File"
},
{
"@id": "B1.tif",
"name": "B1.tif",
"type": "Raw Data File"
},
{
"@id": "C1.tif",
"name": "C1.tif",
"type": "Raw Data File"
}
]
}
]
}
],
"characteristicCategories": [
{
"@id": "#MaterialAttribute/PATO:0000122",
"characteristicType": {
"@id": "PATO:0000122",
"annotationValue": "length",
"termSource": "PATO",
"termAccession": "PATO:0000122"
}
}
]
}
]
}